MITOMAP: Reported mtDNA Deletions

Last Edited: Nov 12, 2019

Deletion Junction (nt:nt) Deletion Size (bp)Sorted ascending Repeat Location (nt) Repeat Type More Info
3173:14161 -10987 3166-3173/14154-14161 D, 8/8 1
4398:14822 -10423 4389-4398/14812-12821 D, 10/10 3
6124:15894 -9769 3108-6017/15901-15912 D, 8/10 1
6601:16284 -9682 6592-3501/16274-16283 D, 10/10 1
7449:15926 -8476 - NR 1
6023:14424 -8400 6023/14423 D, 1/1 1
5786:13923 -8136 - NR 1
8030:16075 -8044 8030-8034/16071-16075 D, 5/5 1
8032:16075 -8042 8030-8034/16071-16075 D, 5/5 1
8034:16076 -8041 8030-8034/16071-16075 D, 5/5 1
6238:14103 -7864 6235-6238/14099-14102 D, 4/4 1
8213:16070 -7856 8207-8212/16071-16076 D, 6/6 1
7635:15440 -7804 7627-7630/15432-15435 D, 4/4 1
7669:15437 -7767 7662-7669/15429-15436 D, 8/8 2
7992:15730 -7737 7986-7992/15723-15729 D, 7/7 1
6075:13799 -7723 6076-6084/13799-13807 D, 9/9 1
6380:14096 -7715 6369-6374/14099-14104 D, 6/6 1
6465:14135 -7669 6466-6476/14135-14145 D, 11/11 1
6329:13994 -7664 6325-6340/13989-14005 D, 17/18 1
6325:13989 -7663 6326-6341/13889-14004 D, 16/17 2
6330:13994 -7663 6331-6341/13994-14004 D, 11/11 2
6341:13989 -7647 - - 1
8439:16075 -7635 8433-8439/16068-16074 D, 7/7 1
7815:15389 -7565 7816-7823/15381-15388 D, 8/8 2
7974:15496 -7521 7975-7982/15496-15503 D, 8/8 3
7130:14628 -7497 - - 1
7543:15018 -7474 - NR 1
8637:16084 -7446 - NR 1
7989:15435 -7445 - NR 1
8648:16085 -7436 8637-8648/16073-16084 D, 12/12 7
7193:14596 -7402 7169-7173/14609-14613 I, 5/5 1
8582:15957 -7374 - NR 1
8571:15827 -7255 8563-8571/15827/15835 D, 9/9 1
8412:15664 -7251 8407-8420/15658-15671 D, 12/14 1
6226:13456 -7229 6218-6226/13447-13455 D, 9/9 1
8573:15727 -7153 8574-8587/15727-15737 D, 11/14 1
8580:15731 -7150 8581-8587/15731-15737 D, 7/7 1
5772:12916 -7143 - - 1
8210:15339 -7128 - NR 2
8543:15672 -7128 - - 1
8992:16072 -7079 - NR 3
8623:15662 -7038 8617-8623/15656-15662 D, 7/7 1
8823:15855 -7031 8814-8823/15845-15854 D, 10/10 1
7808:14799 -6990 7809-7814/14799-14804 D, 6/6 1
5793:12767 -6973 5786-5792/12757-12763 D, 6/7 1
7501:14428 -6926 7502-7506/14428-14432 D, 5/5 1
8517:15421 -6903 8512-8517/15408-15412 D, 5/5 2
7128:13992 -6863 - - 1
5835:12661 -6825 5836-5843/12666-12673 D, 6/8 1
8304:15055 -6750 8305-8312/15049-15056 D, 6/8 1
7817:14536 -6718 - NR 1
6742:13223 -6480 - - 1
9238:15576 -6337 9226-9230/15568-15572 D, 5/5 1
8469:14805 -6335 8470-8476/14805-14811 D, 7/7 1
7829:14135 -6305 7824-7829/14129-14134 D, 6/6 1
7409:13687 -6277 - NR 1
8828:14896 -6067 8829-8838/14896-14095 D, 10/10 2
7841:13905 -6063 7842-7849/13905-13912 D, 6/8 4
7438:13476 -6037 7439/13476 D, 1/1 1
8569:14603 -6033 - - 1
8563:14596 -6032 8558-8563/14588-14593 D, 6/6 1
7777:13794 -6016 7780-7783/13796-13799 D, 4/4 1
9431:15423 -5991 - - 1
9995:15897 -5901 9998-10006/15895-15903 D, 9/9 2
7959:13787 -5827 7954-7959/13781-13786 D, 6/6 1
10154:15945 -5790 10138-10144/15944-15950 D, 5/7 3
8213:13991 -5777 8214-8220/13991-13997 D, 7/7 1
7775:13532 -5756 7769-7775/13525-13531 D, 7/7 1
8278:13770 -5491 8272-8277/13763-13768 D, 6/6 1
8312:13667 -5354 8310-8312/13664-13666 D, 3/3 1
10587:15913 -5325 10576-10581/15905-15910 D, 6/6 1
7493:12762 -5268 7491-7493/12759-12761 D, 3/3 1
8624:13886 -5261 8617-8624/13877-13885 D, 8/8 1
6002:11221 -5218 - - 1
10370:15570 -5199 10366-10370/15568-15572 D, 5/5 1
8562:13759 -5196 - NR 2
8421:13564 -5142 - NR 1
10759:15890 -5130 NR NR 1
9180:14281 -5100 9172-9175/14289-14292 D, 4/4 1
10050:15076 -5025 10051-10055/15076-15080 M, 5/5 1
8707:13723 -5015 - NR 1
8468:13446 -4977 8470-8482/13447-13459 D, 13/13 3
8469:13447 -4977 8470-8482/13447-13459 D, 13/13 134
8482:13460 -4977 8470-8482/13447-13459 D, 13/13 7
8482:13446 -4963 8470-8482/13447-13459 D, 13/13 1
9320:14273 -4952 - - 1
8630:13581 -4950 - NR 1
502:5443 -4939 504-512/5443-5451 D, 8/9 1
7205:12090 -4884 - - 1
10952:15837 -4884 10953-10961/15837-15845 D, 9/9 2
10961:15846 -4884 - NR 1
8631:13513 -4881 8625-8631/13506-13512 D, 7/7 1
10080:14959 -4878 - - 1
10747:15598 -4850 - - 1
7794:12561 -4766 - NR 1
470:5152 -4681 471-483/5152-5163 D, 12/13 1
9144:13816 -4671 9137-9144/13808-13815 D, 8/8 1
7697:12364 -4666 - NR 2
8570:13236 -4665 8566-8571/13237-13242 I, 5/6 2
10946:15587 -4640 - - 1
10058:14593 -4534 10059-10063/14593-14597 D, 5/5 2
9357:13865 -4507 9345-9361/13851-13868 D, 16/18 1
7964:12432 -4467 - NR 1
8426:12894 -4467 8416-8420/12890-12894 D, 5/5 1
10943:15372 -4428 10942-10951/15362-15371 D, 10/10 1
10941:15362 -4420 10942-10951/15362-15371 D, 10/10 1
11368:15786 -4417 11364-11368/15783-15787 D, 5/5 1
8577:12983 -4405 - - 1
8929:13301 -4371 - - 1
8095:12393 -4297 - NR 1
8032:12300 -4267 8032-8033/12299-12300 D, 2/2 1
10169:14435 -4265 10161-10165/14424-14428 D, 5/5 1
9498:13739 -4240 - - 1
9483:13723 -4239 - - 1
9485:13723 -4237 - NR 1
9486:13723 -4236 - - 1
10676:14868 -4191 10666-10676/14856-14866 D, 11/11 1
10665:14856 -4190 10666-10676/14856-14866 D, 10/11 3
8058:12215 -4156 - NR 1
11035:15183 -4147 - - 1
11262:15375 -4112 - - 1
547:4443 -3895 536-548/4430-4442 D, 13/13 7
9191:12909 -3717 9189-9191/12906-12908 D, 3/3 1
8371:12084 -3712 - NR 1
1836:5447 -3610 1837-1840/5447-5451 D, 4/4 1
10190:13753 -3562 10191-10198/13753-13760 D, 8/8 2
9515:13055 -3539 9517-9525/13055-13063 D, 7/9 1
7491:11004 -3512 7484-7491/10996-11003 D, 8/8 2
9574:12972 -3397 9568-9574/12965-12971 D, 7/7 1
8034:11423 -3388 - NR 1
10744:14124 -3379 10745-10754/14124-14133 D, 9/10 1
12211:15556 -3344 - - 1
12203:15355 -3151 - NR 1
10969:14119 -3149 - NR 1
6074:9179 -3104 6080-6083/9181-9184 D, 4/4 1
12439:15390 -2950 NR D, 6/6 1
11232:13980 -2747 11234-11242/13981-13989 D, 9/9 4
13039:15661 -2621 - - 1
10598:13206 -2607 10587-10592/13192-13197 D, 6/6 1
10367:12829 -2461 10365-10367/12826-12828 D, 3/3 1
10223:12604 -2380 - NR 1
12103:14414 -2310 12103-12112/14412-14421 D, 10/10 1
12102:14412 -2309 12103-12112/14412-14421 D, 10/10 4
12112:14422 -2309 12103-12112/14412-14421 D, 10/10 1
12113:14422 -2308 12103-12112/14412-14421 D, 10/10 2
12113:14421 -2307 - - 1
12112:14412 -2299 - - 1
7845:9748 -1902 7838-7840/9747-9749 D, 3/3 3
13033:14426 -1392 13025-13033/14417-14425 D, 9/9 1
3323:3588 -264 3330-3334/3597-3601 D, 5/5 1
16153:16308 -154 16165-16165/16308-16319 D, 12/12 1
297:348 -50 298-306/349-357 D, 9/9 2
9486:9502 -15 9480-9486/9495-9501 D, 7/7 1
8271:8281 -9 NR NR 49
105:112 -6 - NR 5
6019:6025 -5 6015-6019/6020-6024 D, 5/5 1
14786:14791 -4 14783-14786 D, 4/4 1

Note:

Most deletions above are likely somatic mutations. Other somatic variants can be found here. Only deletions with sequenced breakpoints are included. Numerous other reports of mapped deletions have been published without specific sequence data reference.

Reported deletion junctions may be approximate due to the presence identical repeat sequences at the break points. Alternate junctions may be reported in the cited literature due to the inherent ambiguities of the direct repeats.

  • D = direct repeat.
  • I = indirect repeat, homology as specified.
  • NR = no repeats reported.
  • N = number of subjects in which the deletion was detected.

References for the "common" deletion.
Topic revision: r224 - 18 Jan 2020, ShipingZhang

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