MITOMAP: Reported mtDNA Deletions

Last Edited: Nov 12, 2019

Deletion Junction (nt:nt) Deletion Size (bp) Repeat Location (nt) Repeat TypeSorted ascending More Info
5772:12916 -7143 - - 1
6002:11221 -5218 - - 1
6341:13989 -7647 - - 1
6742:13223 -6480 - - 1
7128:13992 -6863 - - 1
7130:14628 -7497 - - 1
7205:12090 -4884 - - 1
8543:15672 -7128 - - 1
8569:14603 -6033 - - 1
8577:12983 -4405 - - 1
8929:13301 -4371 - - 1
9320:14273 -4952 - - 1
9431:15423 -5991 - - 1
9483:13723 -4239 - - 1
9486:13723 -4236 - - 1
9498:13739 -4240 - - 1
10080:14959 -4878 - - 1
10747:15598 -4850 - - 1
10946:15587 -4640 - - 1
11035:15183 -4147 - - 1
11262:15375 -4112 - - 1
12112:14412 -2299 - - 1
12113:14421 -2307 - - 1
12211:15556 -3344 - - 1
13039:15661 -2621 - - 1
6023:14424 -8400 6023/14423 D, 1/1 1
7438:13476 -6037 7439/13476 D, 1/1 1
4398:14822 -10423 4389-4398/14812-12821 D, 10/10 3
6601:16284 -9682 6592-3501/16274-16283 D, 10/10 1
8823:15855 -7031 8814-8823/15845-15854 D, 10/10 1
8828:14896 -6067 8829-8838/14896-14095 D, 10/10 2
10941:15362 -4420 10942-10951/15362-15371 D, 10/10 1
10943:15372 -4428 10942-10951/15362-15371 D, 10/10 1
12102:14412 -2309 12103-12112/14412-14421 D, 10/10 4
12103:14414 -2310 12103-12112/14412-14421 D, 10/10 1
12112:14422 -2309 12103-12112/14412-14421 D, 10/10 1
12113:14422 -2308 12103-12112/14412-14421 D, 10/10 2
10665:14856 -4190 10666-10676/14856-14866 D, 10/11 3
6330:13994 -7663 6331-6341/13994-14004 D, 11/11 2
6465:14135 -7669 6466-6476/14135-14145 D, 11/11 1
10676:14868 -4191 10666-10676/14856-14866 D, 11/11 1
8573:15727 -7153 8574-8587/15727-15737 D, 11/14 1
8648:16085 -7436 8637-8648/16073-16084 D, 12/12 7
16153:16308 -154 16165-16165/16308-16319 D, 12/12 1
470:5152 -4681 471-483/5152-5163 D, 12/13 1
8412:15664 -7251 8407-8420/15658-15671 D, 12/14 1
547:4443 -3895 536-548/4430-4442 D, 13/13 7
8468:13446 -4977 8470-8482/13447-13459 D, 13/13 3
8469:13447 -4977 8470-8482/13447-13459 D, 13/13 134
8482:13460 -4977 8470-8482/13447-13459 D, 13/13 7
8482:13446 -4963 8470-8482/13447-13459 D, 13/13 1
6325:13989 -7663 6326-6341/13889-14004 D, 16/17 2
9357:13865 -4507 9345-9361/13851-13868 D, 16/18 1
6329:13994 -7664 6325-6340/13989-14005 D, 17/18 1
8032:12300 -4267 8032-8033/12299-12300 D, 2/2 1
7493:12762 -5268 7491-7493/12759-12761 D, 3/3 1
7845:9748 -1902 7838-7840/9747-9749 D, 3/3 3
8312:13667 -5354 8310-8312/13664-13666 D, 3/3 1
9191:12909 -3717 9189-9191/12906-12908 D, 3/3 1
10367:12829 -2461 10365-10367/12826-12828 D, 3/3 1
1836:5447 -3610 1837-1840/5447-5451 D, 4/4 1
6074:9179 -3104 6080-6083/9181-9184 D, 4/4 1
6238:14103 -7864 6235-6238/14099-14102 D, 4/4 1
7635:15440 -7804 7627-7630/15432-15435 D, 4/4 1
7777:13794 -6016 7780-7783/13796-13799 D, 4/4 1
9180:14281 -5100 9172-9175/14289-14292 D, 4/4 1
14786:14791 -4 14783-14786 D, 4/4 1
3323:3588 -264 3330-3334/3597-3601 D, 5/5 1
6019:6025 -5 6015-6019/6020-6024 D, 5/5 1
7501:14428 -6926 7502-7506/14428-14432 D, 5/5 1
8030:16075 -8044 8030-8034/16071-16075 D, 5/5 1
8032:16075 -8042 8030-8034/16071-16075 D, 5/5 1
8034:16076 -8041 8030-8034/16071-16075 D, 5/5 1
8426:12894 -4467 8416-8420/12890-12894 D, 5/5 1
8517:15421 -6903 8512-8517/15408-15412 D, 5/5 2
9238:15576 -6337 9226-9230/15568-15572 D, 5/5 1
10058:14593 -4534 10059-10063/14593-14597 D, 5/5 2
10169:14435 -4265 10161-10165/14424-14428 D, 5/5 1
10370:15570 -5199 10366-10370/15568-15572 D, 5/5 1
11368:15786 -4417 11364-11368/15783-15787 D, 5/5 1
10154:15945 -5790 10138-10144/15944-15950 D, 5/7 3
6380:14096 -7715 6369-6374/14099-14104 D, 6/6 1
7808:14799 -6990 7809-7814/14799-14804 D, 6/6 1
7829:14135 -6305 7824-7829/14129-14134 D, 6/6 1
7959:13787 -5827 7954-7959/13781-13786 D, 6/6 1
8213:16070 -7856 8207-8212/16071-16076 D, 6/6 1
8278:13770 -5491 8272-8277/13763-13768 D, 6/6 1
8563:14596 -6032 8558-8563/14588-14593 D, 6/6 1
10587:15913 -5325 10576-10581/15905-15910 D, 6/6 1
10598:13206 -2607 10587-10592/13192-13197 D, 6/6 1
12439:15390 -2950 NR D, 6/6 1
5793:12767 -6973 5786-5792/12757-12763 D, 6/7 1
5835:12661 -6825 5836-5843/12666-12673 D, 6/8 1
7841:13905 -6063 7842-7849/13905-13912 D, 6/8 4
8304:15055 -6750 8305-8312/15049-15056 D, 6/8 1
7775:13532 -5756 7769-7775/13525-13531 D, 7/7 1
7992:15730 -7737 7986-7992/15723-15729 D, 7/7 1
8213:13991 -5777 8214-8220/13991-13997 D, 7/7 1
8439:16075 -7635 8433-8439/16068-16074 D, 7/7 1
8469:14805 -6335 8470-8476/14805-14811 D, 7/7 1
8580:15731 -7150 8581-8587/15731-15737 D, 7/7 1
8623:15662 -7038 8617-8623/15656-15662 D, 7/7 1
8631:13513 -4881 8625-8631/13506-13512 D, 7/7 1
9486:9502 -15 9480-9486/9495-9501 D, 7/7 1
9574:12972 -3397 9568-9574/12965-12971 D, 7/7 1
9515:13055 -3539 9517-9525/13055-13063 D, 7/9 1
6124:15894 -9769 3108-6017/15901-15912 D, 8/10 1
3173:14161 -10987 3166-3173/14154-14161 D, 8/8 1
7491:11004 -3512 7484-7491/10996-11003 D, 8/8 2
7669:15437 -7767 7662-7669/15429-15436 D, 8/8 2
7815:15389 -7565 7816-7823/15381-15388 D, 8/8 2
7974:15496 -7521 7975-7982/15496-15503 D, 8/8 3
8624:13886 -5261 8617-8624/13877-13885 D, 8/8 1
9144:13816 -4671 9137-9144/13808-13815 D, 8/8 1
10190:13753 -3562 10191-10198/13753-13760 D, 8/8 2
502:5443 -4939 504-512/5443-5451 D, 8/9 1
10744:14124 -3379 10745-10754/14124-14133 D, 9/10 1
297:348 -50 298-306/349-357 D, 9/9 2
6075:13799 -7723 6076-6084/13799-13807 D, 9/9 1
6226:13456 -7229 6218-6226/13447-13455 D, 9/9 1
8571:15827 -7255 8563-8571/15827/15835 D, 9/9 1
9995:15897 -5901 9998-10006/15895-15903 D, 9/9 2
10952:15837 -4884 10953-10961/15837-15845 D, 9/9 2
11232:13980 -2747 11234-11242/13981-13989 D, 9/9 4
13033:14426 -1392 13025-13033/14417-14425 D, 9/9 1
7193:14596 -7402 7169-7173/14609-14613 I, 5/5 1
8570:13236 -4665 8566-8571/13237-13242 I, 5/6 2
10050:15076 -5025 10051-10055/15076-15080 M, 5/5 1
105:112 -6 - NR 5
5786:13923 -8136 - NR 1
7409:13687 -6277 - NR 1
7449:15926 -8476 - NR 1
7543:15018 -7474 - NR 1
7697:12364 -4666 - NR 2
7794:12561 -4766 - NR 1
7817:14536 -6718 - NR 1
7964:12432 -4467 - NR 1
7989:15435 -7445 - NR 1
8034:11423 -3388 - NR 1
8058:12215 -4156 - NR 1
8095:12393 -4297 - NR 1
8210:15339 -7128 - NR 2
8271:8281 -9 NR NR 49
8371:12084 -3712 - NR 1
8421:13564 -5142 - NR 1
8562:13759 -5196 - NR 2
8582:15957 -7374 - NR 1
8630:13581 -4950 - NR 1
8637:16084 -7446 - NR 1
8707:13723 -5015 - NR 1
8992:16072 -7079 - NR 3
9485:13723 -4237 - NR 1
10223:12604 -2380 - NR 1
10759:15890 -5130 NR NR 1
10961:15846 -4884 - NR 1
10969:14119 -3149 - NR 1
12203:15355 -3151 - NR 1

Note:

Most deletions above are likely somatic mutations. Other somatic variants can be found here. Only deletions with sequenced breakpoints are included. Numerous other reports of mapped deletions have been published without specific sequence data reference.

Reported deletion junctions may be approximate due to the presence identical repeat sequences at the break points. Alternate junctions may be reported in the cited literature due to the inherent ambiguities of the direct repeats.

  • D = direct repeat.
  • I = indirect repeat, homology as specified.
  • NR = no repeats reported.
  • N = number of subjects in which the deletion was detected.

References for the "common" deletion.
Topic revision: r226 - 24 Jan 2020, ShipingZhang

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