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You are here: Foswiki>MITOMAP Web>LocusCO1 (15 Sep 2015, UnknownUser)Edit Attach
The Amino Acids of mtCO1 (5904-7445)
5912 5921 5930 5939 5948 5957
5' ATG TTC GCC GAC CGT TGA CTA TTC TCT ACA AAC CAC AAA GAC ATT GGA ACA CTA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
M F A D R W L F S T N H K D I G T L
5966 5975 5984 5993 6002 6011
TAC CTA TTA TTC GGC GCA TGA GCT GGA GTC CTA GGC ACA GCT CTA AGC CTC CTT
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Y L L F G A W A G V L G T A L S L L
6020 6029 6038 6047 6056 6065
ATT CGA GCC GAG CTG GGC CAG CCA GGC AAC CTT CTA GGT AAC GAC CAC ATC TAC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
I R A E L G Q P G N L L G N D H I Y
6074 6083 6092 6101 6110 6119
AAC GTT ATC GTC ACA GCC CAT GCA TTT GTA ATA ATC TTC TTC ATA GTA ATA CCC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
N V I V T A H A F V M I F F M V M P
6128 6137 6146 6155 6164 6173
ATC ATA ATC GGA GGC TTT GGC AAC TGA CTA GTT CCC CTA ATA ATC GGT GCC CCC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
I M I G G F G N W L V P L M I G A P
6182 6191 6200 6209 6218 6227
GAT ATG GCG TTT CCC CGC ATA AAC AAC ATA AGC TTC TGA CTC TTA CCT CCC TCT
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
D M A F P R M N N M S F W L L P P S
6236 6245 6254 6263 6272 6281
CTC CTA CTC CTG CTC GCA TCT GCT ATA GTG GAG GCC GGA GCA GGA ACA GGT TGA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
L L L L L A S A M V E A G A G T G W
6290 6299 6308 6317 6326 6335
ACA GTC TAC CCT CCC TTA GCA GGG AAC TAC TCC CAC CCT GGA GCC TCC GTA GAC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
T V Y P P L A G N Y S H P G A S V D
6344 6353 6362 6371 6380 6389
CTA ACC ATC TTC TCC TTA CAC CTA GCA GGT GTC TCC TCT ATC TTA GGG GCC ATC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
L T I F S L H L A G V S S I L G A I
6398 6407 6416 6425 6434 6443
AAT TTC ATC ACA ACA ATT ATC AAT ATA AAA CCC CCT GCC ATA ACC CAA TAC CAA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
N F I T T I I N M K P P A M T Q Y Q
6452 6461 6470 6479 6488 6497
ACG CCC CTC TTC GTC TGA TCC GTC CTA ATC ACA GCA GTC CTA CTT CTC CTA TCT
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
T P L F V W S V L I T A V L L L L S
6506 6515 6524 6533 6542 6551
CTC CCA GTC CTA GCT GCT GGC ATC ACT ATA CTA CTA ACA GAC CGC AAC CTC AAC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
L P V L A A G I T M L L T D R N L N
6560 6569 6578 6587 6596 6605
ACC ACC TTC TTC GAC CCC GCC GGA GGA GGA GAC CCC ATT CTA TAC CAA CAC CTA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
T T F F D P A G G G D P I L Y Q H L
6614 6623 6632 6641 6650 6659
TTC TGA TTT TTC GGT CAC CCT GAA GTT TAT ATT CTT ATC CTA CCA GGC TTC GGA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
F W F F G H P E V Y I L I L P G F G
6668 6677 6686 6695 6704 6713
ATA ATC TCC CAT ATT GTA ACT TAC TAC TCC GGA AAA AAA GAA CCA TTT GGA TAC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
M I S H I V T Y Y S G K K E P F G Y
6722 6731 6740 6749 6758 6767
ATA GGT ATG GTC TGA GCT ATG ATA TCA ATT GGC TTC CTA GGG TTT ATC GTG TGA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
M G M V W A M M S I G F L G F I V W
6776 6785 6794 6803 6812 6821
GCA CAC CAT ATA TTT ACA GTA GGA ATA GAC GTA GAC ACA CGA GCA TAT TTC ACC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
A H H M F T V G M D V D T R A Y F T
6830 6839 6848 6857 6866 6875
TCC GCT ACC ATA ATC ATC GCT ATC CCC ACC GGC GTC AAA GTA TTT AGC TGA CTC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
S A T M I I A I P T G V K V F S W L
6884 6893 6902 6911 6920 6929
GCC ACA CTC CAC GGA AGC AAT ATG AAA TGA TCT GCT GCA GTG CTC TGA GCC CTA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
A T L H G S N M K W S A A V L W A L
6938 6947 6956 6965 6974 6983
GGA TTC ATC TTT CTT TTC ACC GTA GGT GGC CTG ACT GGC ATT GTA TTA GCA AAC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
G F I F L F T V G G L T G I V L A N
6992 7001 7010 7019 7028 7037
TCA TCA CTA GAC ATC GTA CTA CAC GAC ACG TAC TAC GTT GTA GCC CAC TTC CAC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
S S L D I V L H D T Y Y V V A H F H
7046 7055 7064 7073 7082 7091
TAT GTC CTA TCA ATA GGA GCT GTA TTT GCC ATC ATA GGA GGC TTC ATT CAC TGA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Y V L S M G A V F A I M G G F I H W
7100 7109 7118 7127 7136 7145
TTT CCC CTA TTC TCA GGC TAC ACC CTA GAC CAA ACC TAC GCC AAA ATC CAT TTC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
F P L F S G Y T L D Q T Y A K I H F
7154 7163 7172 7181 7190 7199
ACT ATC ATA TTC ATC GGC GTA AAT CTA ACT TTC TTC CCA CAA CAC TTT CTC GGC
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
T I M F I G V N L T F F P Q H F L G
7208 7217 7226 7235 7244 7253
CTA TCC GGA ATG CCC CGA CGT TAC TCG GAC TAC CCC GAT GCA TAC ACC ACA TGA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
L S G M P R R Y S D Y P D A Y T T W
7262 7271 7280 7289 7298 7307
AAC ATC CTA TCA TCT GTA GGC TCA TTC ATT TCT CTA ACA GCA GTA ATA TTA ATA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
N I L S S V G S F I S L T A V M L M
7316 7325 7334 7343 7352 7361
ATT TTC ATG ATT TGA GAA GCC TTC GCT TCG AAG CGA AAA GTC CTA ATA GTA GAA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
I F M I W E A F A S K R K V L M V E
7370 7379 7388 7397 7406 7415
GAA CCC TCC ATA AAC CTG GAG TGA CTA TAT GGA TGC CCC CCA CCC TAC CAC ACA
--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
E P S M N L E W L Y G C P P P Y H T
7424 7433 7442
TTC GAA GAA CCC GTA TAC ATA AAA TCT AGA 3'
--- --- --- --- --- --- --- --- --- ---
F E E P V Y M K S *
* Terminates at UAG with frameshift (Temperley 2010)
Amino Acid Distribution in human mtCO1
|
CO1 (5904-7445) AA |
# |
% |
|
Ala (A) |
40 |
7.8% |
|
Arg (R) |
8 |
1.6% |
|
Asn (N) |
17 |
3.3% |
|
Asp (D) |
15 |
2.9% |
|
Cys (C) |
1 |
0.2% |
|
Gln (Q) |
6 |
1.2% |
|
Glu (E) |
10 |
1.9% |
|
Gly (G) |
46 |
8.9% |
|
His (H) |
18 |
3.5% |
|
Ile (I) |
38 |
7.4% |
|
End (*) |
1 |
0.2% |
|
Leu1 (L)(UUA/G) |
7 |
1.4% |
|
Leu2 (L)(CUN) |
55 |
10.7% |
|
Lys (K) |
10 |
1.9% |
|
Met (M) |
32 |
6.2% |
|
Phe (F) |
41 |
8.0% |
|
Pro (p) |
29 |
5.6% |
|
Ser1 (S)(UCN) |
28 |
5.4% |
|
Ser2 (S)(AGU/C) |
4 |
0.8% |
|
Thr (T) |
34 |
6.6% |
|
Trp (W) |
16 |
3.1% |
|
Tyr (Y) |
22 |
4.3% |
|
Val (V) |
36 |
7.0% |
|
CO1 Total AA |
514 |
100.0% |
|
Acidic (Asp + Glu) |
25 |
4.9% |
|
Basic (Arg + Lys) |
18 |
3.5% |
|
Aromatic (Phe + Trp + Tyr) |
79 |
15.4% |
|
Hydrophobic (Aromatic + Ile + Leu + Met + Val) |
247 |
48.1% |
|
Molecular Wt |
57050 |
|
|
Average pI |
6.04 |
Amino acid detail: ATP6, ATP8, ND1, ND2, ND3, ND4, ND4L, ND5, ND6, CO1, CO2, CO3, CytB. Go to the Human Mitochondrial Genetic Code.
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Topic revision: r1 - 15 Sep 2015, UnknownUser
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